STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1988PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1755 ABC transporter, ATP-binding protein. (331 aa)    
Predicted Functional Partners:
Ppha_1989
PFAM: cobalamin synthesis protein P47K; KEGG: cte:CT1756 hypothetical protein.
 
    0.954
Ppha_1990
KEGG: cte:CT1757 hypothetical protein.
 
    0.943
Ppha_1991
PFAM: periplasmic binding protein; KEGG: cph:Cpha266_0448 periplasmic binding protein.
 
  
 0.880
Ppha_1987
TIGRFAM: TonB family protein; KEGG: plt:Plut_1585 TonB-like.
     
 0.777
Ppha_1993
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0446 ABC transporter related.
 
   0.693
Ppha_1994
PFAM: transport system permease protein; KEGG: cph:Cpha266_0445 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.600
Ppha_0421
PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_0386 protein of unknown function DUF214.
 
 
 0.585
Ppha_0718
PFAM: protein of unknown function DUF214; KEGG: cch:Cag_1781 lipoprotein releasing system.
 
 
 0.576
Ppha_1992
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sat:SYN_01058 TonB dependent receptor family.
 
    0.568
Ppha_1387
PFAM: protein of unknown function DUF214; KEGG: plt:Plut_1052 hypothetical protein.
 
 
 0.567
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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