STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1997KEGG: cph:Cpha266_0440 TonB-dependent receptor, putative. (741 aa)    
Predicted Functional Partners:
Ppha_2162
KEGG: cph:Cpha266_0858 transcriptional regulator, Fis family.
 
 
 0.890
Ppha_1987
TIGRFAM: TonB family protein; KEGG: plt:Plut_1585 TonB-like.
 
 
 0.802
Ppha_0732
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: plt:Plut_1585 TonB-like.
 
 
 0.762
Ppha_1990
KEGG: cte:CT1757 hypothetical protein.
  
  
 0.759
Ppha_0778
KEGG: pvi:Cvib_0555 hypothetical protein.
  
     0.713
Ppha_1775
KEGG: cch:Cag_0405 hypothetical protein.
  
   
 0.696
Ppha_0465
PFAM: hydroxyneurosporene synthase; KEGG: cph:Cpha266_0428 hydroxyneurosporene synthase.
  
     0.678
Ppha_2603
KEGG: cph:Cpha266_0345 hypothetical protein.
  
     0.666
Ppha_0909
KEGG: pvi:Cvib_1196 hypothetical protein.
  
     0.642
Ppha_0766
KEGG: cph:Cpha266_1359 hypothetical protein.
  
     0.641
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.