STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2007KEGG: cch:Cag_0872 hypothetical protein. (455 aa)    
Predicted Functional Partners:
Ppha_2008
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_0873 TPR repeat.
 
     0.869
Ppha_2825
KEGG: mar:MAE_46960 hypothetical protein.
  
     0.617
Ppha_0273
SMART: TIR protein; KEGG: fal:FRAAL5311 hypothetical protein; putative transmembrane receptor activity.
  
    0.529
Ppha_1248
KEGG: cph:Cpha266_2183 hypothetical protein.
  
     0.507
Ppha_0634
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cph:Cpha266_1844 hypothetical protein.
  
     0.500
Ppha_0162
KEGG: cph:Cpha266_0648 hypothetical protein.
  
     0.487
Ppha_1257
KEGG: cph:Cpha266_2183 hypothetical protein.
  
     0.487
Ppha_2379
KEGG: cph:Cpha266_2183 hypothetical protein.
  
     0.487
Ppha_2006
KEGG: gfo:GFO_1511 conserved hypothetical protein, membrane.
       0.484
Ppha_2824
KEGG: mar:MAE_61600 predicted nucleic acid-binding protein.
  
     0.482
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.