STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2017KEGG: cph:Cpha266_2243 hypothetical protein. (331 aa)    
Predicted Functional Partners:
Ppha_0614
KEGG: cph:Cpha266_1384 transposase family protein.
 
    0.587
Ppha_1074
KEGG: cph:Cpha266_1384 transposase family protein.
 
    0.587
Ppha_2544
KEGG: cph:Cpha266_1384 transposase family protein.
 
    0.579
Ppha_2018
KEGG: dsh:Dshi_3149 peptidase M15D VanX D-ala-D-ala dipeptidase.
 
     0.523
Ppha_0052
PFAM: zinc finger SWIM domain protein; KEGG: cph:Cpha266_1236 zinc finger, SWIM domain protein.
  
     0.456
Ppha_2019
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rca:Rcas_2450 radical SAM domain protein.
 
     0.455
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.