STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2018KEGG: dsh:Dshi_3149 peptidase M15D VanX D-ala-D-ala dipeptidase. (174 aa)    
Predicted Functional Partners:
Ppha_2019
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rca:Rcas_2450 radical SAM domain protein.
       0.613
Ppha_2020
Hypothetical protein.
       0.613
Ppha_2021
KEGG: pyo:PY02104 rhoptry protein Pfam: ATP-synt_E_2 Myosin_tail_1 DUF1374 MttA_Hcf106 AIP3 FCH DUF148 RasGAP Phg_2220_C MACPF VAR1 EAP30 Syntaxin-6_N PROSITE: ASN_RICH LYS_RICH PHE_RICH.
       0.531
Ppha_2022
PFAM: Extracellular ligand-binding receptor; KEGG: cbf:CLI_0539 putative high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein.
       0.531
Ppha_2023
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_0447 ATP binding protein of ABC transporter for branched-chain amino acids.
       0.527
Ppha_2017
KEGG: cph:Cpha266_2243 hypothetical protein.
 
     0.523
Ppha_2024
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cjd:JJD26997_0773 high affinity branched-chain amino acid ABC transporter, ATP-binding protein.
       0.488
murF
UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
     
 0.485
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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