close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2019PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rca:Rcas_2450 radical SAM domain protein. (525 aa)    
Predicted Functional Partners:
Ppha_2020
Hypothetical protein.
       0.773
Ppha_0270
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tle:Tlet_1717 radical SAM domain protein.
  
     0.745
Ppha_0513
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cch:Cag_0114 elongator protein 3/MiaB/NifB.
  
     0.742
Ppha_2757
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cch:Cag_0116 elongator protein 3/MiaB/NifB.
  
     0.734
Ppha_2731
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_0200 radical SAM domain protein.
  
     0.730
Ppha_1034
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_1895 radical SAM domain protein.
  
     0.711
Ppha_2021
KEGG: pyo:PY02104 rhoptry protein Pfam: ATP-synt_E_2 Myosin_tail_1 DUF1374 MttA_Hcf106 AIP3 FCH DUF148 RasGAP Phg_2220_C MACPF VAR1 EAP30 Syntaxin-6_N PROSITE: ASN_RICH LYS_RICH PHE_RICH.
       0.664
Ppha_2022
PFAM: Extracellular ligand-binding receptor; KEGG: cbf:CLI_0539 putative high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein.
       0.664
Ppha_2023
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_0447 ATP binding protein of ABC transporter for branched-chain amino acids.
       0.660
Ppha_2585
KEGG: pvi:Cvib_0316 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.623
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.