STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2038KEGG: swo:Swol_0997 hypothetical protein. (1241 aa)    
Predicted Functional Partners:
Ppha_2037
KEGG: swo:Swol_0990 hypothetical protein.
 
    0.952
Ppha_2041
KEGG: swo:Swol_0999 ATP-dependent protease La.
 
    0.942
Ppha_2040
PFAM: PglZ domain protein; KEGG: swo:Swol_0998 hypothetical protein.
 
     0.940
Ppha_2039
PFAM: protein of unknown function DUF1016; KEGG: cch:Cag_0874 hypothetical protein.
       0.747
Ppha_2035
PFAM: Protein of unkown function DUF1819 putative inner membrane; KEGG: swo:Swol_0988 hypothetical protein.
       0.690
Ppha_2036
KEGG: swo:Swol_0989 hypothetical protein.
       0.690
Ppha_1452
PFAM: restriction modification system DNA specificity domain; KEGG: cch:Cag_1526 restriction endonuclease S subunits-like.
 
 
 0.594
Ppha_0745
PFAM: restriction modification system DNA specificity domain; KEGG: vei:Veis_3549 restriction modification system DNA specificity domain.
  
 
 0.533
Ppha_1219
KEGG: spc:Sputcn32_3525 restriction modification system DNA specificity domain.
  
 
 0.533
Ppha_2122
Hypothetical protein; KEGG: bxe:Bxe_A0223 putative HsdS protein.
  
 
 0.533
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.