STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2040PFAM: PglZ domain protein; KEGG: swo:Swol_0998 hypothetical protein. (740 aa)    
Predicted Functional Partners:
Ppha_2038
KEGG: swo:Swol_0997 hypothetical protein.
 
     0.940
Ppha_2037
KEGG: swo:Swol_0990 hypothetical protein.
 
    0.928
Ppha_2041
KEGG: swo:Swol_0999 ATP-dependent protease La.
 
     0.921
Ppha_1422
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1301 helicase domain protein.
  
 0.885
Ppha_2039
PFAM: protein of unknown function DUF1016; KEGG: cch:Cag_0874 hypothetical protein.
       0.773
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
  
 0.681
Ppha_2035
PFAM: Protein of unkown function DUF1819 putative inner membrane; KEGG: swo:Swol_0988 hypothetical protein.
       0.667
Ppha_2036
KEGG: swo:Swol_0989 hypothetical protein.
       0.667
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
  
 0.598
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
   
   0.589
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.