STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2041KEGG: swo:Swol_0999 ATP-dependent protease La. (684 aa)    
Predicted Functional Partners:
Ppha_2037
KEGG: swo:Swol_0990 hypothetical protein.
 
    0.978
Ppha_2038
KEGG: swo:Swol_0997 hypothetical protein.
 
    0.942
Ppha_2040
PFAM: PglZ domain protein; KEGG: swo:Swol_0998 hypothetical protein.
 
     0.921
Ppha_2912
KEGG: rrs:RoseRS_0299 hypothetical protein.
  
  
 0.805
Ppha_1892
PFAM: protein of unknown function DUF814; KEGG: cph:Cpha266_0942 protein of unknown function DUF814.
  
    0.692
Ppha_2039
PFAM: protein of unknown function DUF1016; KEGG: cch:Cag_0874 hypothetical protein.
       0.671
Ppha_0741
KEGG: bxe:Bxe_B0298 putative phage resistance protein.
 
    0.632
Ppha_2035
PFAM: Protein of unkown function DUF1819 putative inner membrane; KEGG: swo:Swol_0988 hypothetical protein.
       0.610
Ppha_2036
KEGG: swo:Swol_0989 hypothetical protein.
       0.610
Ppha_2637
KEGG: pna:Pnap_1140 putative ATP-binding protein.
  
    0.583
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.