STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2046PFAM: HipA domain protein; KEGG: cch:Cag_1275 hypothetical protein. (251 aa)    
Predicted Functional Partners:
Ppha_2047
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_1274 transcriptional regulator, XRE family.
 
    0.936
Ppha_1557
PFAM: HipA domain protein; KEGG: bxe:Bxe_B2229 hypothetical protein.
  
     0.623
Ppha_2229
PFAM: HipA domain protein; KEGG: aba:Acid345_2426 HipA-like protein.
  
     0.597
Ppha_0261
PFAM: HipA domain protein; KEGG: eca:ECA0127 hypothetical protein.
  
     0.562
Ppha_1558
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: bpt:Bpet1353 putative DNA-binding protein.
  
    0.516
Ppha_2048
TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cph:Cpha266_0725 hydrogenase expression/formation protein HypE.
       0.464
Ppha_2049
TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: plt:Plut_1455 hydrogenase formation HypD protein.
       0.464
Ppha_2050
TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: cph:Cpha266_0723 hydrogenase assembly chaperone HypC/HupF.
       0.458
Ppha_0267
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: gur:Gura_3064 hypothetical protein.
  
    0.451
Ppha_0262
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: gur:Gura_3064 hypothetical protein.
  
    0.439
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.