Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ppha_2057PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_0717 NUDIX hydrolase. (168 aa)    
Predicted Functional Partners:
Ppha_1892
PFAM: protein of unknown function DUF814; KEGG: cph:Cpha266_0942 protein of unknown function DUF814.
  
     0.614
rpsU
PFAM: ribosomal protein S21; KEGG: pvi:Cvib_0348 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
 
    0.579
Ppha_2058
Hypothetical protein.
       0.558
Ppha_2059
KEGG: cph:Cpha266_0714 hypothetical protein.
       0.558
Ppha_2548
KEGG: pvi:Cvib_0351 hypothetical protein.
  
     0.530
Ppha_0498
KEGG: pvi:Cvib_1472 hypothetical protein.
  
    0.468
Ppha_2069
TPR repeat; KEGG: cch:Cag_1348 TPR repeat.
 
    0.450
Ppha_2908
PFAM: protein of unknown function DUF1232; KEGG: plt:Plut_2125 hypothetical protein.
  
     0.450
Ppha_0511
PFAM: peptidase M50; KEGG: cph:Cpha266_0506 peptidase M50.
 
     0.446
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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