STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2115PFAM: protein of unknown function UPF0150; KEGG: mar:MAE_62810 hypothetical protein. (68 aa)    
Predicted Functional Partners:
Ppha_2116
KEGG: mar:MAE_62820 hypothetical protein.
 
 
 
 0.969
Ppha_1594
KEGG: mar:MAE_00130 hypothetical protein.
 
 
 
 0.602
Ppha_1593
PFAM: protein of unknown function UPF0150; KEGG: tbd:Tbd_1973 hypothetical protein.
  
     0.597
Ppha_0455
PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_0168 hypothetical protein.
  
     0.564
Ppha_2114
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT2121 methyltransferase, putative.
       0.539
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.