Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ppha_2122Hypothetical protein; KEGG: bxe:Bxe_A0223 putative HsdS protein. (163 aa)    
Predicted Functional Partners:
Ppha_2123
KEGG: gur:Gura_4113 putative transcriptional regulator.
       0.774
Ppha_0750
TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: vei:Veis_3546 type I restriction-modification system, M subunit.
  
 
 0.533
Ppha_0913
KEGG: cph:Cpha266_1712 N-6 DNA methylase.
  
 
 0.533
Ppha_1218
PFAM: N-6 DNA methylase; KEGG: spc:Sputcn32_3524 N-6 DNA methylase.
  
 
 0.533
Ppha_1421
KEGG: dge:Dgeo_1545 putative type II DNA modification enzyme.
  
 
 0.533
Ppha_1454
PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: cph:Cpha266_1130 N-6 DNA methylase.
  
 
 0.533
Ppha_1604
KEGG: mma:MM_2294 type I restriction-modification system specificity subunit.
  
 
 0.533
Ppha_2038
KEGG: swo:Swol_0997 hypothetical protein.
  
 
 0.533
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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