STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2153KEGG: plt:Plut_0624 hypothetical protein. (85 aa)    
Predicted Functional Partners:
Ppha_2152
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cph:Cpha266_0868 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.873
Ppha_0116
KEGG: cph:Cpha266_0798 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
 
 0.614
Ppha_0234
KEGG: cph:Cpha266_0798 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
 
 0.614
Ppha_0441
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cph:Cpha266_0408 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
 
 0.614
Ppha_1155
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: plt:Plut_1207 sigma-24 (FecI-like).
  
 
 0.614
Ppha_1406
KEGG: cph:Cpha266_1292 hypothetical protein.
  
 
 0.594
Ppha_2151
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cch:Cag_1888 carotenoid isomerase, putative.
       0.474
Ppha_2154
PFAM: regulatory protein ArsR; KEGG: plt:Plut_0623 putative transcriptional regulator, ArsR family.
       0.473
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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