STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2157KEGG: cph:Cpha266_0863 photosystem P840 reaction center protein PscD. (144 aa)    
Predicted Functional Partners:
Ppha_1059
PFAM: bacteriochlorophyll A protein; KEGG: plt:Plut_1500 bacteriochlorophyll A protein.
    
   0.902
Ppha_2692
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cch:Cag_0344 photosystem P840 reaction center iron-sulfur protein.
    
 
 0.875
Ppha_2693
KEGG: cch:Cag_0343 photosystem P840 reaction center, large subunit.
    
   0.874
Ppha_0208
KEGG: plt:Plut_0144 Ric1 protein.
    
   0.698
Ppha_1150
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: plt:Plut_1216 ferredoxin, 4Fe-4S.
    
   0.490
Ppha_1868
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cch:Cag_0639 NADH dehydrogenase I, 23 kDa subunit.
    
   0.490
Ppha_0111
KEGG: cph:Cpha266_1405 hypothetical protein.
    
   0.487
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
       0.483
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.