STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2162KEGG: cph:Cpha266_0858 transcriptional regulator, Fis family. (298 aa)    
Predicted Functional Partners:
Ppha_2163
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: plt:Plut_0612 ExbD/TolR family protein.
 
 
 0.930
Ppha_2164
TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: cph:Cpha266_0856 MotA/TolQ/ExbB proton channel.
 
 
 0.913
Ppha_1997
KEGG: cph:Cpha266_0440 TonB-dependent receptor, putative.
 
 
 0.890
Ppha_2161
PFAM: WD40 domain protein beta Propeller; KEGG: pvi:Cvib_1164 WD40 domain protein beta propeller.
 
 
 
 0.809
Ppha_0034
KEGG: cch:Cag_1214 hypothetical protein.
 
     0.772
Ppha_1262
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cch:Cag_1014 TonB-dependent receptor-related protein.
 
 
 
 0.746
Ppha_2158
TIGRFAM: tol-pal system protein YbgF; KEGG: cph:Cpha266_0862 membrane lipoprotein lipid attachment site.
 
   
 0.745
Ppha_1270
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cch:Cag_1076 hypothetical protein.
  
     0.726
Ppha_0730
KEGG: cph:Cpha266_0604 hypothetical protein.
 
 
 0.697
Ppha_0731
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cph:Cpha266_0605 biopolymer transport protein ExbD/TolR.
 
 
 0.685
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.