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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2191KEGG: cph:Cpha266_0458 hypothetical protein. (106 aa)    
Predicted Functional Partners:
Ppha_2189
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: cph:Cpha266_0459 hypothetical protein.
 
     0.848
Ppha_2342
KEGG: cch:Cag_1695 reverse transcriptase family protein.
 
     0.760
Ppha_2192
PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_0457 putative signal transduction protein with NACHT domain.
 
     0.649
Ppha_2194
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
     0.643
Ppha_2193
PFAM: plasmid stabilization system; KEGG: cch:Cag_0909 hypothetical protein.
       0.594
Ppha_2007
KEGG: cch:Cag_0872 hypothetical protein.
  
     0.447
Ppha_2825
KEGG: mar:MAE_46960 hypothetical protein.
  
     0.411
Ppha_0161
PFAM: protein of unknown function UPF0175; KEGG: cph:Cpha266_0647 hypothetical protein.
  
     0.408
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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