Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_2205KEGG: pvi:Cvib_1533 porin, opacity type. (212 aa)    
Predicted Functional Partners:
Ppha_0410
PFAM: outer membrane chaperone Skp (OmpH); KEGG: cch:Cag_1448 outer membrane protein OmpH.
    
 
 0.517
Ppha_2201
PFAM: phosphoesterase PA-phosphatase related; KEGG: pvi:Cvib_0514 phosphoesterase, PA-phosphatase related.
  
    0.516
Ppha_2202
PFAM: glycosyl transferase family 39; KEGG: cph:Cpha266_0690 glycosyl transferase, family 39.
  
  
 0.505
Ppha_2200
KEGG: plt:Plut_1792 hypothetical protein.
       0.489
Ppha_2203
PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_0689 glycosyl transferase, family 2.
       0.489
Ppha_2204
PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_0688 hypothetical protein.
       0.489
Ppha_1284
KEGG: cph:Cpha266_1758 hypothetical protein.
  
     0.406
Ppha_1285
KEGG: cph:Cpha266_1757 hypothetical protein.
  
     0.403
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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