STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2218KEGG: cph:Cpha266_0675 hypothetical protein. (347 aa)    
Predicted Functional Partners:
Ppha_2217
PFAM: nitroreductase; KEGG: plt:Plut_0455 nitroreductase family protein.
       0.766
aat
leucyl/phenylalanyl-tRNA/protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
       0.694
Ppha_2219
PFAM: UvrD/REP helicase; KEGG: cch:Cag_1415 DNA helicase II.
       0.677
Ppha_2220
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: plt:Plut_0452 alpha amylase, catalytic subdomain.
 
     0.495
Ppha_2215
Arsenite-activated ATPase ArsA; KEGG: plt:Plut_0457 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase.
       0.483
Ppha_1385
KEGG: cph:Cpha266_1319 phosphate-binding protein, putative.
  
     0.459
Ppha_1372
KEGG: pvi:Cvib_0831 hypothetical protein.
  
     0.452
Ppha_2185
PFAM: Lipocalin family protein; KEGG: cph:Cpha266_0694 lipocalin family protein; Belongs to the calycin superfamily. Lipocalin family.
  
     0.418
Ppha_1674
KEGG: cph:Cpha266_1046 hypothetical protein.
  
     0.403
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.