Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_2220PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: plt:Plut_0452 alpha amylase, catalytic subdomain. (480 aa)    
Predicted Functional Partners:
Ppha_2221
PFAM: protein of unknown function UPF0047; KEGG: cch:Cag_1417 hypothetical protein.
  
    0.579
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
  
 0.558
Ppha_2218
KEGG: cph:Cpha266_0675 hypothetical protein.
 
     0.494
Ppha_2219
PFAM: UvrD/REP helicase; KEGG: cch:Cag_1415 DNA helicase II.
       0.477
Ppha_1609
PFAM: amino acid permease-associated region; KEGG: plt:Plut_1308 amino acid permease.
   
 0.472
dxs
Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
     
 0.459
Ppha_2782
KEGG: pvi:Cvib_1672 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
  
 
 0.440
Ppha_2217
PFAM: nitroreductase; KEGG: plt:Plut_0455 nitroreductase family protein.
       0.417
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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