STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2254PFAM: Mammalian cell entry related domain protein; KEGG: cch:Cag_0478 VpsC protein. (292 aa)    
Predicted Functional Partners:
Ppha_2252
PFAM: protein of unknown function DUF140; KEGG: pvi:Cvib_0490 protein of unknown function DUF140.
 
 0.995
Ppha_2253
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_0441 ATPase.
 
 0.995
Ppha_2255
PFAM: beta-lactamase; KEGG: cte:CT0324 D-alanyl-D-alanine carboxypeptidease, putative.
 
     0.777
Ppha_1200
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cch:Cag_1395 anti-anti-sigma factor, putative.
 
 
 0.707
Ppha_0671
KEGG: cph:Cpha266_0557 hypothetical protein.
  
     0.611
Ppha_1015
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: plt:Plut_1366 anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.611
Ppha_1017
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cph:Cpha266_1829 anti-sigma-factor antagonist.
  
 
 0.611
Ppha_2251
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cch:Cag_0481 phosphoesterase PHP-like.
       0.575
Ppha_2577
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: pvi:Cvib_0325 DNA polymerase III, delta subunit.
  
     0.534
Ppha_2841
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: plt:Plut_2072 N-acetylmuramoyl-L-alanine amidase.
 
     0.527
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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