STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2255PFAM: beta-lactamase; KEGG: cte:CT0324 D-alanyl-D-alanine carboxypeptidease, putative. (379 aa)    
Predicted Functional Partners:
Ppha_1198
PFAM: conserved hypothetical protein; KEGG: cch:Cag_1396 hypothetical protein.
  
 0.980
Ppha_2762
PFAM: conserved hypothetical protein; KEGG: cch:Cag_0194 hypothetical protein.
  
 0.980
Ppha_0178
PFAM: glycoside hydrolase family 3 domain protein; KEGG: cph:Cpha266_2499 glycoside hydrolase, family 3 domain protein.
  
 0.970
Ppha_2813
Beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase family 3 domain protein; KEGG: cph:Cpha266_2578 glycoside hydrolase, family 3 domain protein.
  
 0.947
Ppha_2763
PFAM: Na+/solute symporter; KEGG: cph:Cpha266_0206 Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
     0.792
Ppha_2254
PFAM: Mammalian cell entry related domain protein; KEGG: cch:Cag_0478 VpsC protein.
 
     0.778
Ppha_2252
PFAM: protein of unknown function DUF140; KEGG: pvi:Cvib_0490 protein of unknown function DUF140.
       0.673
Ppha_2253
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_0441 ATPase.
       0.673
Ppha_0046
PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: cph:Cpha266_0047 muramoyltetrapeptide carboxypeptidase.
 
     0.617
Ppha_2251
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cch:Cag_0481 phosphoesterase PHP-like.
       0.545
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.