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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2271KEGG: dol:Dole_0659 hypothetical protein. (72 aa)    
Predicted Functional Partners:
Ppha_2272
PFAM: protein of unknown function DUF497; KEGG: syn:ssr0757 hypothetical protein.
 
   0.967
Ppha_1715
PFAM: protein of unknown function DUF497; KEGG: rrs:RoseRS_0832 protein of unknown function DUF497.
 
   0.835
Ppha_0914
PFAM: protein of unknown function DUF497; KEGG: cte:CT0821 hypothetical protein.
 
   0.806
Ppha_2409
PFAM: protein of unknown function DUF497; KEGG: rpe:RPE_1776 protein of unknown function DUF497.
 
   0.560
Ppha_2521
KEGG: bbr:BB1689 hypothetical protein.
 
   0.541
Ppha_2270
Hypothetical protein.
       0.535
Ppha_2865
KEGG: swo:Swol_2490 hypothetical protein.
  
     0.450
Ppha_0756
KEGG: swo:Swol_2490 hypothetical protein.
  
     0.415
Ppha_1926
KEGG: syf:Synpcc7942_0410 hypothetical protein.
  
   0.413
Ppha_2273
Putative transcriptional regulator; TIGRFAM: addiction module antidote protein; KEGG: noc:Noc_0569 transcriptional regulator, Cro/CI family.
       0.400
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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