STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2318KEGG: cph:Cpha266_0131 hypothetical protein. (125 aa)    
Predicted Functional Partners:
Ppha_2319
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0130 putative glutamate synthase (NADPH) small subunit.
     
 0.785
Ppha_2316
TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: cph:Cpha266_0133 DsrE family protein.
       0.639
Ppha_2317
TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: cph:Cpha266_0132 DsrE family protein.
       0.639
Ppha_2320
KEGG: cph:Cpha266_0129 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
       0.606
Ppha_2315
TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: cph:Cpha266_0134 DsrH family protein.
       0.549
Ppha_2314
KEGG: cch:Cag_1949 hypothetical protein.
     
 0.489
Ppha_2313
PFAM: Nitrate reductase gamma subunit; KEGG: cph:Cpha266_0136 nitrate reductase, gamma subunit.
     
 0.470
Ppha_2310
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0139 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
       0.456
Ppha_2311
KEGG: cch:Cag_1946 hypothetical protein.
       0.456
Ppha_2309
PFAM: Polysulphide reductase NrfD; KEGG: cph:Cpha266_0140 polysulphide reductase, NrfD.
       0.455
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.