Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_2325PFAM: Rhodanese domain protein; KEGG: cch:Cag_1960 rhodanese-like. (155 aa)    
Predicted Functional Partners:
Ppha_2326
KEGG: cph:Cpha266_0123 hypothetical protein.
 
  
 0.719
Ppha_2324
PFAM: SirA family protein; KEGG: cph:Cpha266_0125 SirA family protein; Belongs to the sulfur carrier protein TusA family.
  
  
 0.673
Ppha_2501
KEGG: cph:Cpha266_0524 hypothetical protein.
 
   
 0.641
Ppha_1094
PFAM: major facilitator superfamily MFS_1; KEGG: cch:Cag_0889 transporter, putative.
  
   
 0.571
Ppha_2540
PFAM: FAD dependent oxidoreductase; KEGG: cph:Cpha266_2269 FAD dependent oxidoreductase.
  
     0.565
Ppha_1833
KEGG: cph:Cpha266_1229 succinylglutamate desuccinylase/aspartoacylase.
  
     0.516
Ppha_1836
Methyltransferase type 11; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_2109 methyltransferase type 11.
  
   
 0.472
Ppha_2315
TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: cph:Cpha266_0134 DsrH family protein.
 
   
 0.469
Ppha_1539
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.461
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.456
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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