STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2330PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: cph:Cpha266_0843 membrane protein involved in aromatic hydrocarbon degradation. (475 aa)    
Predicted Functional Partners:
Ppha_2881
KEGG: cph:Cpha266_2704 putative lipoprotein.
 
 
 
 0.843
Ppha_0652
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: cph:Cpha266_0533 surface antigen (D15).
  
 
 
 0.670
Ppha_0246
KEGG: cph:Cpha266_1202 hypothetical protein.
    
 
 0.555
Ppha_0432
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: cph:Cpha266_0397 surface antigen (D15).
    
 
 0.555
Ppha_2385
Patatin; PFAM: surface antigen (D15); Patatin; KEGG: pvi:Cvib_0421 surface antigen (D15).
    
 
 0.555
Ppha_2329
SMART: Rhodanese domain protein; KEGG: cch:Cag_0955 rhodanese-like.
       0.529
Ppha_0778
KEGG: pvi:Cvib_0555 hypothetical protein.
  
     0.501
Ppha_0465
PFAM: hydroxyneurosporene synthase; KEGG: cph:Cpha266_0428 hydroxyneurosporene synthase.
  
     0.462
Ppha_0811
KEGG: cch:Cag_1922 sulfur oxidation protein SoxX.
  
     0.459
Ppha_2603
KEGG: cph:Cpha266_0345 hypothetical protein.
  
   
 0.457
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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