Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_2394KEGG: xom:XOO_3260 hypothetical protein. (87 aa)    
Predicted Functional Partners:
Ppha_2395
PFAM: protein of unknown function DUF1016; KEGG: dol:Dole_2094 protein of unknown function DUF1016.
 
     0.817
Ppha_1218
PFAM: N-6 DNA methylase; KEGG: spc:Sputcn32_3524 N-6 DNA methylase.
 
 
 0.684
Ppha_0913
KEGG: cph:Cpha266_1712 N-6 DNA methylase.
 
 
 0.597
Ppha_1217
PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; KEGG: spc:Sputcn32_3523 protein of unknown function DUF450.
 
  
 0.581
Ppha_0750
TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: vei:Veis_3546 type I restriction-modification system, M subunit.
  
 
 0.533
Ppha_1421
KEGG: dge:Dgeo_1545 putative type II DNA modification enzyme.
  
 
 0.533
Ppha_1454
PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: cph:Cpha266_1130 N-6 DNA methylase.
  
 
 0.533
Ppha_1604
KEGG: mma:MM_2294 type I restriction-modification system specificity subunit.
  
 
 0.533
Ppha_2038
KEGG: swo:Swol_0997 hypothetical protein.
  
 
 0.533
Ppha_1924
KEGG: mar:MAE_05060 type I site-specific deoxyribonuclease.
 
  
 0.460
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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