STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2398KEGG: cph:Cpha266_2043 hypothetical protein. (167 aa)    
Predicted Functional Partners:
rnpA
Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.717
Ppha_2603
KEGG: cph:Cpha266_0345 hypothetical protein.
  
     0.712
Ppha_2775
KEGG: cph:Cpha266_1807 hypothetical protein.
  
     0.697
Ppha_1517
KEGG: cph:Cpha266_1093 hypothetical protein.
  
     0.695
Ppha_0909
KEGG: pvi:Cvib_1196 hypothetical protein.
  
     0.677
Ppha_0778
KEGG: pvi:Cvib_0555 hypothetical protein.
  
     0.645
Ppha_1503
KEGG: cph:Cpha266_1535 hypothetical protein.
  
     0.631
Ppha_1345
KEGG: cph:Cpha266_2565 hypothetical protein.
  
     0.565
Ppha_0465
PFAM: hydroxyneurosporene synthase; KEGG: cph:Cpha266_0428 hydroxyneurosporene synthase.
  
     0.554
Ppha_2006
KEGG: gfo:GFO_1511 conserved hypothetical protein, membrane.
  
     0.551
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.