Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_2418PFAM: OmpA/MotB domain protein; KEGG: cph:Cpha266_2084 OmpA/MotB domain protein. (337 aa)    
Predicted Functional Partners:
Ppha_2419
KEGG: cch:Cag_0316 hypothetical protein.
       0.682
Ppha_2420
PFAM: Heavy metal transport/detoxification protein; KEGG: cph:Cpha266_2086 heavy metal transport/detoxification protein.
  
    0.567
pal-2
TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: plt:Plut_0616 peptidoglycan-associated lipoprotein; Belongs to the Pal lipoprotein family.
  
     0.539
pal
TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: cph:Cpha266_0860 OmpA/MotB domain protein; Belongs to the Pal lipoprotein family.
  
     0.516
Ppha_0410
PFAM: outer membrane chaperone Skp (OmpH); KEGG: cch:Cag_1448 outer membrane protein OmpH.
 
 
 0.506
pal-3
TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: cph:Cpha266_0860 OmpA/MotB domain protein; Belongs to the Pal lipoprotein family.
  
     0.500
Ppha_2161
PFAM: WD40 domain protein beta Propeller; KEGG: pvi:Cvib_1164 WD40 domain protein beta propeller.
 
 
 0.464
Ppha_2417
KEGG: cph:Cpha266_2083 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
  
  
 0.428
Ppha_2421
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pvi:Cvib_0399 tetratricopeptide TPR_2 repeat protein.
   
   0.404
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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