STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2428KEGG: rfe:RF_0889 hypothetical protein. (86 aa)    
Predicted Functional Partners:
Ppha_2429
KEGG: cph:Cpha266_2540 hypothetical protein.
 
     0.929
Ppha_0905
KEGG: rpe:RPE_0295 hypothetical protein.
  
     0.774
Ppha_1402
KEGG: cph:Cpha266_1284 hypothetical protein.
  
     0.774
Ppha_2376
KEGG: amt:Amet_0301 hypothetical protein.
  
     0.720
Ppha_0903
KEGG: mar:MAE_20750 hypothetical protein.
  
     0.698
Ppha_0192
KEGG: gur:Gura_3956 hypothetical protein.
  
     0.662
Ppha_1403
KEGG: cph:Cpha266_1285 hypothetical protein.
  
     0.662
Ppha_1097
KEGG: mar:MAE_20900 hypothetical protein.
 
     0.661
Ppha_2427
Putative signal transduction protein with Nacht domain; PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_0460 protein of unknown function DUF323.
       0.452
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.