STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2452TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: tpt:Tpet_1095 CRISPR-associated RAMP protein, Csm3 family. (285 aa)    
Predicted Functional Partners:
Ppha_2451
TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; KEGG: cph:Cpha266_2047 CRISPR-associated RAMP protein, Csm4 family.
 
 
 0.997
Ppha_2453
TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: protein of unknown function DUF310; KEGG: mth:MTH1081 hypothetical protein.
 
 
 0.996
Ppha_2454
TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: cph:Cpha266_2050 CRISPR-associated protein, Csm1 family.
 
 
 0.994
Ppha_2450
Hypothetical protein; KEGG: cph:Cpha266_2046 CRISPR-associated RAMP protein, Csm5 family.
  
 
 0.988
Ppha_2448
CRISPR-associated protein Cas6; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).
 
   
 0.900
Ppha_2449
KEGG: cph:Cpha266_2045 hypothetical protein.
 
     0.821
Ppha_2457
KEGG: cph:Cpha266_2052 hypothetical protein.
 
     0.403
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.