STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2488PFAM: Patatin; KEGG: cph:Cpha266_2157 patatin. (262 aa)    
Predicted Functional Partners:
Ppha_2489
PFAM: Aldehyde Dehydrogenase_; KEGG: cph:Cpha266_2158 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.795
Ppha_2487
KEGG: plt:Plut_0302 outer surface protein, putative.
       0.570
Ppha_2490
PFAM: Integral membrane protein TerC; KEGG: cph:Cpha266_2160 integral membrane protein TerC.
       0.521
Ppha_2491
PFAM: UspA domain protein; KEGG: cph:Cpha266_2161 UspA domain protein.
       0.508
Ppha_2486
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pvi:Cvib_0364 YbaK/prolyl-tRNA synthetase associated region.
       0.452
Ppha_2485
PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_2155 glycosyl transferase, group 1.
 
     0.404
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.