Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_2490PFAM: Integral membrane protein TerC; KEGG: cph:Cpha266_2160 integral membrane protein TerC. (251 aa)    
Predicted Functional Partners:
Ppha_2846
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cph:Cpha266_0098 protein of unknown function DUF21.
    
 0.902
Ppha_2491
PFAM: UspA domain protein; KEGG: cph:Cpha266_2161 UspA domain protein.
       0.775
Ppha_2488
PFAM: Patatin; KEGG: cph:Cpha266_2157 patatin.
       0.520
Ppha_2489
PFAM: Aldehyde Dehydrogenase_; KEGG: cph:Cpha266_2158 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.518
Ppha_2770
PFAM: Integral membrane protein TerC; KEGG: cph:Cpha266_1776 integral membrane protein TerC.
  
     0.503
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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