Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ppha_2539PFAM: MscS Mechanosensitive ion channel; KEGG: plt:Plut_0292 hypothetical protein. (360 aa)    
Predicted Functional Partners:
Ppha_2540
PFAM: FAD dependent oxidoreductase; KEGG: cph:Cpha266_2269 FAD dependent oxidoreductase.
       0.617
Ppha_1640
Glycoside hydrolase 15-related; PFAM: protein of unknown function DUF547; glycoside hydrolase 15-related; KEGG: noc:Noc_2053 glycoside hydrolase 15-related.
 
    0.588
Ppha_2538
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pvi:Cvib_0358 peptidylprolyl isomerase, FKBP-type.
       0.487
Ppha_2398
KEGG: cph:Cpha266_2043 hypothetical protein.
  
     0.419
Ppha_2541
KEGG: cph:Cpha266_2271 acetyltransferase, CysE/LacA/LpxA/NodL family.
       0.403
Ppha_2098
PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: plt:Plut_0668 glutathione-regulated potassium-efflux system protein KefC, putative; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.401
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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