STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2548KEGG: pvi:Cvib_0351 hypothetical protein. (107 aa)    
Predicted Functional Partners:
Ppha_2549
PFAM: alpha/beta hydrolase fold; KEGG: cch:Cag_1627 3-oxoadipate enol-lactonase, putative.
  
    0.790
Ppha_1200
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cch:Cag_1395 anti-anti-sigma factor, putative.
 
    0.769
Ppha_2603
KEGG: cph:Cpha266_0345 hypothetical protein.
  
     0.763
Ppha_0045
PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: cph:Cpha266_0046 ATP-dependent Clp protease adaptor protein ClpS; Belongs to the ClpS family.
  
    0.701
Ppha_1360
Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; KEGG: cph:Cpha266_1331 CBS domain containing protein.
  
     0.694
Ppha_2892
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
  
    0.688
Ppha_0498
KEGG: pvi:Cvib_1472 hypothetical protein.
  
     0.668
Ppha_1650
PFAM: protein of unknown function DUF164; KEGG: cch:Cag_1111 hypothetical protein.
  
     0.668
Ppha_2069
TPR repeat; KEGG: cch:Cag_1348 TPR repeat.
 
     0.667
Ppha_1876
PFAM: ferrochelatase; KEGG: cph:Cpha266_0958 ferrochelatase; Belongs to the ferrochelatase family.
  
     0.661
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.