Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ppha_2590PFAM: acyltransferase 3; KEGG: sde:Sde_0174 acyltransferase-like. (360 aa)    
Predicted Functional Partners:
Ppha_2589
PFAM: glycosyl transferase group 1; KEGG: pme:NATL1_21041 hypothetical protein.
     
 0.592
Ppha_0673
PFAM: acyltransferase 3; KEGG: abo:ABO_0912 acetyltransferase, putative.
  
     0.561
Ppha_2586
TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: plasmid stabilization system; Addiction module toxin Txe/YoeB; KEGG: plt:Plut_1930 addiction module toxin, Txe/YoeB.
       0.527
Ppha_2587
KEGG: cch:Cag_0601 hypothetical protein.
       0.527
Ppha_2588
Hypothetical protein.
       0.527
Ppha_0519
Capsular exopolysaccharide family; KEGG: cph:Cpha266_2649 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
   
 0.493
Ppha_1007
KEGG: cph:Cpha266_1819 uncharacterized protein involved in exopolysaccharide biosynthesis-like.
 
   
 0.490
Ppha_2591
PFAM: glycosyl transferase group 1; KEGG: cch:Cag_0447 hypothetical protein.
     
 0.490
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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