Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2637KEGG: pna:Pnap_1140 putative ATP-binding protein. (353 aa)    
Predicted Functional Partners:
Ppha_2636
KEGG: pna:Pnap_1139 hypothetical protein.
 
     0.948
Ppha_2041
KEGG: swo:Swol_0999 ATP-dependent protease La.
  
    0.583
Ppha_2037
KEGG: swo:Swol_0990 hypothetical protein.
  
    0.577
Ppha_2912
KEGG: rrs:RoseRS_0299 hypothetical protein.
  
    0.577
Ppha_2638
KEGG: cch:Cag_1574 hypothetical protein.
       0.531
Ppha_2639
KEGG: cph:Cpha266_0306 hypothetical protein.
       0.531
Ppha_1892
PFAM: protein of unknown function DUF814; KEGG: cph:Cpha266_0942 protein of unknown function DUF814.
  
    0.475
Ppha_2523
KEGG: rpe:RPE_2175 hypothetical protein.
  
     0.432
Ppha_1396
PFAM: protein of unknown function DUF86; KEGG: ppd:Ppro_2947 protein of unknown function DUF86.
  
     0.419
Ppha_1849
PFAM: SMC domain protein; KEGG: mar:MAE_39710 ATPase.
  
     0.408
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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