Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2650KEGG: syn:sll1715 hypothetical protein. (140 aa)    
Predicted Functional Partners:
Ppha_2649
KEGG: cch:Cag_1568 hypothetical protein.
       0.773
Ppha_2648
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: amt:Amet_3370 putative transcriptional regulator, XRE family.
       0.528
Ppha_2119
KEGG: cch:Cag_1343 hypothetical protein.
  
   
 0.466
Ppha_2825
KEGG: mar:MAE_46960 hypothetical protein.
  
     0.453
Ppha_1708
PFAM: protein of unknown function DUF433; KEGG: cph:Cpha266_2222 protein of unknown function DUF433.
  
     0.431
Ppha_0192
KEGG: gur:Gura_3956 hypothetical protein.
  
     0.425
Ppha_1934
KEGG: cau:Caur_3708 hypothetical protein.
  
     0.419
Ppha_2236
PFAM: protein of unknown function UPF0150; KEGG: mhu:Mhun_2716 protein of unknown function UPF0150.
  
     0.409
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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