STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2726KEGG: cch:Cag_0120 hypothetical protein. (207 aa)    
Predicted Functional Partners:
Ppha_2727
KEGG: cph:Cpha266_0190 hypothetical protein.
       0.542
Ppha_2724
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0183 outer membrane efflux protein.
       0.489
Ppha_2725
PFAM: protein of unknown function DUF156; KEGG: pvi:Cvib_1645 hypothetical protein.
       0.489
Ppha_2722
PFAM: acriflavin resistance protein; KEGG: cph:Cpha266_0181 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.434
Ppha_2723
KEGG: plt:Plut_2000 hypothetical protein.
       0.434
Ppha_2721
KEGG: cph:Cpha266_0180 hypothetical protein.
       0.424
Ppha_2720
PFAM: beta-lactamase domain protein; KEGG: cph:Cpha266_0179 beta-lactamase domain protein; Belongs to the metallo-beta-lactamase superfamily. Glyoxalase II family.
       0.412
Ppha_2728
KEGG: cph:Cpha266_0191 hypothetical protein.
       0.404
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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