Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Ppha_2731PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_0200 radical SAM domain protein. (465 aa)    
Predicted Functional Partners:
Ppha_2338
PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: plt:Plut_0408 2-vinyl bacteriochlorophyllide hydratase.
  
 
 0.932
Ppha_2749
TIGRFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: cph:Cpha266_0198 2-vinyl bacteriochlorophyllide hydratase.
  
 
 0.932
Ppha_2758
TIGRFAM: C-20 methyltransferase BchU; PFAM: O-methyltransferase family 2; KEGG: cch:Cag_0115 CrtF-related protein.
  
 
  0.930
Ppha_2752
TIGRFAM: C-20 methyltransferase BchU; PFAM: O-methyltransferase family 2; KEGG: cch:Cag_0115 CrtF-related protein.
  
 
  0.927
Ppha_0368
TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: cph:Cpha266_2360 bacteriochlorophyll c synthase.
  
 
  0.923
Ppha_1617
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_1644 radical SAM domain protein.
  
  
 
0.923
Ppha_2757
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cch:Cag_0116 elongator protein 3/MiaB/NifB.
  
  
 
0.900
Ppha_0270
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tle:Tlet_1717 radical SAM domain protein.
  
     0.760
Ppha_2019
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rca:Rcas_2450 radical SAM domain protein.
  
     0.730
Ppha_0328
TIGRFAM: bacteriochlorophyll 4-vinyl reductase; KEGG: cch:Cag_1810 bacteriochlorophyll 4-vinyl reductase.
 
  
 0.649
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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