Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_2778PFAM: SpoVT/AbrB domain protein; KEGG: cch:Cag_1324 hypothetical protein. (77 aa)    
Predicted Functional Partners:
vapC-3
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
 
 0.965
vapC
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
 
 0.851
Ppha_0420
PFAM: PilT protein domain protein; KEGG: mar:MAE_40120 PilT-like protein.
 
 
 0.846
Ppha_1048
PFAM: PilT protein domain protein; KEGG: cch:Cag_1777 PIN (PilT N terminus) domain.
 
 
 0.809
Ppha_1096
KEGG: cph:Cpha266_0092 virulence associated protein B.
  
     0.702
Ppha_0152
KEGG: rpd:RPD_2062 SpoVT/AbrB-like.
  
     0.679
mnmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.566
Ppha_0521
PFAM: DNA polymerase beta domain protein region; KEGG: cch:Cag_1383 hypothetical protein.
  
     0.451
Ppha_0145
KEGG: cph:Cpha266_1216 hypothetical protein.
  
     0.450
Ppha_2780
TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: cph:Cpha266_0151 nucleoside triphosphate pyrophosphohydrolase.
       0.402
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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