STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
glgEAlpha amylase catalytic region; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB. (670 aa)    
Predicted Functional Partners:
Ppha_2782
KEGG: pvi:Cvib_1672 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
 
 0.972
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
  
 
 0.935
Ppha_2598
PFAM: glycosyl transferase group 1; KEGG: hau:Haur_1032 glycosyl transferase group 1.
    
  0.903
Ppha_1640
Glycoside hydrolase 15-related; PFAM: protein of unknown function DUF547; glycoside hydrolase 15-related; KEGG: noc:Noc_2053 glycoside hydrolase 15-related.
 
   
 0.616
Ppha_1613
TIGRFAM: beta-phosphoglucomutase family hydrolase; PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; Haloacid dehalogenase domain protein hydrolase; KEGG: cch:Cag_0927 beta-phosphoglucomutase hydrolase.
 
  
 0.595
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.485
Ppha_2785
PFAM: metallophosphoesterase; KEGG: cph:Cpha266_2539 hypothetical protein.
       0.485
Ppha_2781
KEGG: cph:Cpha266_2535 phospholipase/carboxylesterase.
       0.482
Ppha_1609
PFAM: amino acid permease-associated region; KEGG: plt:Plut_1308 amino acid permease.
   
 0.472
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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