STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2790KEGG: cch:Cag_0810 DEAD/DEAH box helicase-like. (140 aa)    
Predicted Functional Partners:
Ppha_1454
PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: cph:Cpha266_1130 N-6 DNA methylase.
 
 
 0.688
Ppha_2792
PFAM: protein of unknown function DUF955; SMART: helix-turn-helix domain protein; KEGG: bpd:BURPS668_3906 hypothetical protein.
       0.680
Ppha_2791
KEGG: bpd:BURPS668_3905 hypothetical protein.
       0.642
Ppha_1452
PFAM: restriction modification system DNA specificity domain; KEGG: cch:Cag_1526 restriction endonuclease S subunits-like.
 
 
 0.622
Ppha_1218
PFAM: N-6 DNA methylase; KEGG: spc:Sputcn32_3524 N-6 DNA methylase.
 
 
 0.552
Ppha_1219
KEGG: spc:Sputcn32_3525 restriction modification system DNA specificity domain.
 
 
 0.478
Ppha_1456
PFAM: type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1128 type III restriction enzyme, res subunit.
  
     0.467
Ppha_0750
TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: vei:Veis_3546 type I restriction-modification system, M subunit.
  
 
 0.450
Ppha_0913
KEGG: cph:Cpha266_1712 N-6 DNA methylase.
  
 
 0.450
Ppha_1421
KEGG: dge:Dgeo_1545 putative type II DNA modification enzyme.
  
 
 0.450
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.