STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2797KEGG: cph:Cpha266_2554 hypothetical protein. (316 aa)    
Predicted Functional Partners:
Ppha_0409
PFAM: protein of unknown function DUF1239; KEGG: cph:Cpha266_0380 hypothetical protein.
 
 
 0.957
Ppha_0828
KEGG: cph:Cpha266_1942 hypothetical protein.
 
 
 0.894
Ppha_2546
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_0353 ABC transporter related.
  
  
 0.832
Ppha_0652
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: cph:Cpha266_0533 surface antigen (D15).
  
  
 0.755
Ppha_0432
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: cph:Cpha266_0397 surface antigen (D15).
  
  
 0.704
Ppha_2603
KEGG: cph:Cpha266_0345 hypothetical protein.
  
   
 0.682
Ppha_0329
KEGG: cch:Cag_1809 hypothetical protein.
  
     0.667
lpxC
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
  
 0.659
Ppha_2881
KEGG: cph:Cpha266_2704 putative lipoprotein.
  
  
 0.645
Ppha_0653
KEGG: plt:Plut_1647 hypothetical protein.
  
     0.613
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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