Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2824KEGG: mar:MAE_61600 predicted nucleic acid-binding protein. (159 aa)    
Predicted Functional Partners:
Ppha_2825
KEGG: mar:MAE_46960 hypothetical protein.
 
     0.935
Ppha_1708
PFAM: protein of unknown function DUF433; KEGG: cph:Cpha266_2222 protein of unknown function DUF433.
  
     0.644
Ppha_0161
PFAM: protein of unknown function UPF0175; KEGG: cph:Cpha266_0647 hypothetical protein.
 
     0.629
Ppha_2866
KEGG: ajs:Ajs_3020 hypothetical protein.
  
     0.573
Ppha_2119
KEGG: cch:Cag_1343 hypothetical protein.
  
     0.572
Ppha_0358
KEGG: mar:MAE_48580 hypothetical protein.
  
     0.562
Ppha_0757
KEGG: ajs:Ajs_3020 hypothetical protein.
  
     0.554
Ppha_1709
KEGG: cph:Cpha266_2196 hypothetical protein.
  
     0.518
Ppha_1124
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: cch:Cag_1221 putative transcriptional regulator.
  
     0.500
Ppha_0591
KEGG: cph:Cpha266_2601 hypothetical protein.
  
     0.498
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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