STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2832PFAM: SMC domain protein; KEGG: vei:Veis_4173 SMC domain protein. (580 aa)    
Predicted Functional Partners:
Ppha_0778
KEGG: pvi:Cvib_0555 hypothetical protein.
  
     0.589
Ppha_2041
KEGG: swo:Swol_0999 ATP-dependent protease La.
  
    0.583
Ppha_2037
KEGG: swo:Swol_0990 hypothetical protein.
  
    0.577
Ppha_2912
KEGG: rrs:RoseRS_0299 hypothetical protein.
  
    0.577
Ppha_2613
PFAM: SMC domain protein; KEGG: rca:Rcas_4237 hypothetical protein.
 
     0.559
Ppha_2614
KEGG: maq:Maqu_0563 hypothetical protein.
  
     0.531
Ppha_2512
KEGG: mgm:Mmc1_1577 hypothetical protein.
 
     0.523
Ppha_2513
KEGG: dps:DPPB62 hypothetical protein.
  
     0.514
Ppha_0909
KEGG: pvi:Cvib_1196 hypothetical protein.
  
     0.502
Ppha_0465
PFAM: hydroxyneurosporene synthase; KEGG: cph:Cpha266_0428 hydroxyneurosporene synthase.
  
     0.489
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.