STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2857PFAM: protein of unknown function DUF89; KEGG: cph:Cpha266_1577 protein of unknown function DUF89. (297 aa)    
Predicted Functional Partners:
Ppha_0991
PFAM: Radical SAM domain protein; KEGG: cch:Cag_0688 MoaA/NifB/PqqE family protein.
 
     0.529
Ppha_2858
PFAM: beta-lactamase domain protein; KEGG: pde:Pden_4160 SoxH protein-like.
       0.527
Ppha_2859
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: cph:Cpha266_0466 arsenical-resistance protein.
       0.411
Ppha_2860
SMART: Rhodanese domain protein; KEGG: cph:Cpha266_0463 rhodanese domain protein.
       0.411
Ppha_2667
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cph:Cpha266_0244 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
     0.400
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.