STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2858PFAM: beta-lactamase domain protein; KEGG: pde:Pden_4160 SoxH protein-like. (337 aa)    
Predicted Functional Partners:
Ppha_0812
KEGG: cch:Cag_1923 twin-arginine translocation pathway signal.
 
   
 0.772
Ppha_0816
PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: cch:Cag_1927 twin-arginine translocation pathway signal; Belongs to the 5'-nucleotidase family.
 
   
 0.765
Ppha_0814
Sulfur oxidation protein SoxA; C-type monoheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c and which then may be used for reductive CO(2) fixation.
 
   
 0.764
Ppha_0012
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: cph:Cpha266_0032 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit.
 
 
 0.762
Ppha_0813
PFAM: Sulphur oxidation protein SoxZ; KEGG: cch:Cag_1924 sulfur oxidation protein SoxZ.
 
     0.762
Ppha_0810
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: cph:Cpha266_0468 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit.
 
 
 0.753
Ppha_0010
PFAM: Sulphur oxidation protein SoxZ; KEGG: cph:Cpha266_0030 sulfur oxidation protein SoxZ.
 
     0.747
Ppha_2860
SMART: Rhodanese domain protein; KEGG: cph:Cpha266_0463 rhodanese domain protein.
  
 
 0.682
Ppha_0009
KEGG: cph:Cpha266_0029 thiosulfate-binding protein SoxY.
 
   
 0.679
Ppha_0811
KEGG: cch:Cag_1922 sulfur oxidation protein SoxX.
  
   
 0.612
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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