STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2860SMART: Rhodanese domain protein; KEGG: cph:Cpha266_0463 rhodanese domain protein. (129 aa)    
Predicted Functional Partners:
Ppha_2859
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: cph:Cpha266_0466 arsenical-resistance protein.
       0.776
Ppha_2861
Hypothetical protein.
       0.727
Ppha_2862
Hypothetical protein.
       0.712
Ppha_2858
PFAM: beta-lactamase domain protein; KEGG: pde:Pden_4160 SoxH protein-like.
  
 
 0.700
Ppha_2863
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cph:Cpha266_0918 protein tyrosine phosphatase.
   
   0.692
Ppha_1539
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.556
Ppha_2864
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
       0.520
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.514
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.511
rplQ
PFAM: ribosomal protein L17; KEGG: cph:Cpha266_2395 50S ribosomal protein L17.
  
   0.499
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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