STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2878TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cch:Cag_0071 beta-phosphoglucomutase hydrolase. (233 aa)    
Predicted Functional Partners:
Ppha_1550
Kojibiose phosphorylase; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: cph:Cpha266_1194 kojibiose phosphorylase.
  
 0.920
Ppha_2877
KEGG: cph:Cpha266_2700 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib.
       0.783
argS
KEGG: pvi:Cvib_1732 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase.
  
  
 0.779
Ppha_1571
KEGG: cch:Cag_0861 hypothetical protein.
  
    0.603
Ppha_2257
PFAM: domain of unknown function DUF1730; KEGG: cch:Cag_0255 iron-sulfur cluster-binding protein.
      0.560
Ppha_1613
TIGRFAM: beta-phosphoglucomutase family hydrolase; PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; Haloacid dehalogenase domain protein hydrolase; KEGG: cch:Cag_0927 beta-phosphoglucomutase hydrolase.
  
0.514
Ppha_2782
KEGG: pvi:Cvib_1672 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
 
  
 0.502
Ppha_0762
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cph:Cpha266_0615 oxidoreductase domain protein.
 
  
 0.496
Ppha_1685
5'-Nucleotidase domain protein; PFAM: Alkaline phosphatase; metallophosphoesterase; metalloenzyme domain protein; 5'-Nucleotidase domain protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: cph:Cpha266_1750 5'-nucleotidase domain protein; Belongs to the alkaline phosphatase family.
  
  
 0.445
Ppha_1437
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cph:Cpha266_1144 HAD-superfamily hydrolase, subfamily IA, variant 1.
 
  
 0.409
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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